Source code for podpac.core.coordinates.array_coordinates1d

One-Dimensional Coordinates: Array

from __future__ import division, unicode_literals, print_function, absolute_import

import copy
from collections import OrderedDict

import numpy as np
import traitlets as tl
from collections import OrderedDict

from podpac.core.utils import ArrayTrait
from podpac.core.coordinates.utils import make_coord_array
from podpac.core.coordinates.coordinates1d import Coordinates1d

[docs]class ArrayCoordinates1d(Coordinates1d): """ 1-dimensional array of coordinates. ArrayCoordinates1d is a basic array of 1d coordinates created from an array of coordinate values. Numerical coordinates values are converted to ``float``, and time coordinate values are converted to numpy ``datetime64``. For convenience, podpac automatically converts datetime strings such as ``'2018-01-01'`` to ``datetime64``. The coordinate values must all be of the same type. Parameters ---------- name : str Dimension name, one of 'lat', 'lon', 'time', or 'alt'. coordinates : array, read-only Full array of coordinate values. ctype : str Coordinates type: 'point', 'left', 'right', or 'midpoint'. segment_lengths : array, float, timedelta When ctype is a segment type, the segment lengths for the coordinates. See Also -------- :class:`Coordinates1d`, :class:`UniformCoordinates1d` """ coordinates = ArrayTrait(ndim=1, read_only=True) coordinates.__doc__ = ":array: User-defined coordinate values"
[docs] def __init__(self, coordinates, name=None, ctype=None, segment_lengths=None): """ Create 1d coordinates from an array. Arguments --------- coordinates : array-like coordinate values. name : str, optional Dimension name, one of 'lat', 'lon', 'time', or 'alt'. ctype : str, optional Coordinates type: 'point', 'left', 'right', or 'midpoint'. segment_lengths : array, optional When ctype is a segment type, the segment lengths for the coordinates. The segment_lengths are required for nonmonotonic coordinates. The segment can be inferred from coordinate values for monotonic coordinates. """ # validate and set coordinates self.set_trait('coordinates', make_coord_array(coordinates)) # precalculate once if self.coordinates.size == 0: self._is_monotonic = None self._is_descending = None self._is_uniform = None elif self.coordinates.size == 1: self._is_monotonic = True self._is_descending = None self._is_uniform = True else: deltas = ((self.coordinates[1:] - self.coordinates[:-1]).astype(float) * (self.coordinates[1] - self.coordinates[0]).astype(float)) if np.any(deltas <= 0): self._is_monotonic = False self._is_descending = None self._is_uniform = False else: self._is_monotonic = True self._is_descending = self.coordinates[1] < self.coordinates[0] self._is_uniform = np.allclose(deltas, deltas[0]) # set common properties super(ArrayCoordinates1d, self).__init__(name=name, ctype=ctype, segment_lengths=segment_lengths) # check segment lengths if segment_lengths is None: if self.ctype == 'point' or self.size == 0: self.set_trait('segment_lengths', None) elif self.dtype == np.datetime64: raise TypeError("segment_lengths required for datetime coordinates (if ctype != 'point')") elif self.size == 1: raise TypeError("segment_lengths required for coordinates of size 1 (if ctype != 'point')") elif not self.is_monotonic: raise TypeError("segment_lengths required for nonmonotonic coordinates (if ctype != 'point')")
@tl.default('ctype') def _default_ctype(self): if self.size == 0 or self.size == 1 or not self.is_monotonic or self.dtype == np.datetime64: return 'point' else: return 'midpoint' @tl.default('segment_lengths') def _default_segment_lengths(self): if self.ctype == 'point': return None if self.is_uniform: return np.abs(self.coordinates[1] - self.coordinates[0]) deltas = np.abs(self.coordinates[1:] - self.coordinates[:-1]) if self.is_descending: deltas = deltas[::-1] segment_lengths = np.zeros(self.coordinates.size) if self.ctype == 'left': segment_lengths[:-1] = deltas segment_lengths[-1] = segment_lengths[-2] elif self.ctype == 'right': segment_lengths[1:] = deltas segment_lengths[0] = segment_lengths[1] elif self.ctype == 'midpoint': segment_lengths[:-1] = deltas segment_lengths[1:] += deltas segment_lengths[1:-1] /= 2 if self.is_descending: segment_lengths = segment_lengths[::-1] segment_lengths.setflags(write=False) return segment_lengths def __eq__(self, other): if not super(ArrayCoordinates1d, self).__eq__(other): return False if not np.array_equal(self.coordinates, other.coordinates): return False return True # ------------------------------------------------------------------------------------------------------------------ # Alternate Constructors # ------------------------------------------------------------------------------------------------------------------
[docs] @classmethod def from_xarray(cls, x, **kwargs): """ Create 1d Coordinates from named xarray coordinates. Arguments --------- x : xarray.DataArray Nade DataArray of the coordinate values ctype : str, optional Coordinates type: 'point', 'left', 'right', or 'midpoint'. segment_lengths : (low, high), optional When ctype is a segment type, the segment lengths for the coordinates. The segment_lengths are required for nonmonotonic coordinates. The segment can be inferred from coordinate values for monotonic coordinates. Returns ------- :class:`ArrayCoordinates1d` 1d coordinates """ return cls(,, **kwargs)
[docs] @classmethod def from_definition(cls, d): """ Create 1d coordinates from a coordinates definition. The definition must contain the coordinate values:: c = ArrayCoordinates1d.from_definition({ "values": [0, 1, 2, 3] }) The definition may also contain any of the 1d Coordinates properties:: c = ArrayCoordinates1d.from_definition({ "values": [0, 1, 2, 3], "name": "lat", "ctype": "points" }) Arguments --------- d : dict 1d coordinates array definition Returns ------- :class:`ArrayCoordinates1d` 1d Coordinates See Also -------- definition """ if 'values' not in d: raise ValueError('ArrayCoordinates1d definition requires "values" property') coordinates = d['values'] kwargs = {k:v for k,v in d.items() if k != 'values'} return cls(coordinates, **kwargs)
[docs] def copy(self): """ Make a deep copy of the 1d Coordinates array. Returns ------- :class:`ArrayCoordinates1d` Copy of the coordinates. """ kwargs = return ArrayCoordinates1d(self.coordinates, **kwargs)
# ------------------------------------------------------------------------------------------------------------------ # standard methods, array-like # ------------------------------------------------------------------------------------------------------------------ def __len__(self): return self.size def __getitem__(self, index): coordinates = self.coordinates[index] kwargs = kwargs['ctype'] = self.ctype if self.ctype != 'point': if isinstance(self.segment_lengths, np.ndarray): kwargs['segment_lengths'] = self.segment_lengths[index] else: kwargs['segment_lengths'] = self.segment_lengths return ArrayCoordinates1d(coordinates, **kwargs) # ------------------------------------------------------------------------------------------------------------------ # Properties # ------------------------------------------------------------------------------------------------------------------ @property def size(self): """ Number of coordinates. """ return self.coordinates.size @property def dtype(self): """:type: Coordinates dtype. ``float`` for numerical coordinates and numpy ``datetime64`` for datetime coordinates. """ if self.size == 0: return None elif self.coordinates.dtype == float: return float elif np.issubdtype(self.coordinates.dtype, np.datetime64): return np.datetime64 @property def is_monotonic(self): return self._is_monotonic @property def is_descending(self): return self._is_descending @property def is_uniform(self): return self._is_uniform @property def bounds(self): """ Low and high coordinate bounds. """ # TODO are we sure this can't be a tuple? if self.size == 0: lo, hi = np.nan, np.nan elif self.is_monotonic: lo, hi = sorted([self.coordinates[0], self.coordinates[-1]]) elif self.dtype is np.datetime64: lo, hi = np.min(self.coordinates), np.max(self.coordinates) else: lo, hi = np.nanmin(self.coordinates), np.nanmax(self.coordinates) # read-only array with the correct dtype bounds = np.array([lo, hi], dtype=self.dtype) bounds.setflags(write=False) return bounds @property def argbounds(self): if not self.is_monotonic: return np.argmin(self.coordinates), np.argmax(self.coordinates) elif not self.is_descending: return 0, -1 else: return -1, 0 def _get_definition(self, full=True): d = OrderedDict() d['values'] = self.coordinates d.update(self._full_properties if full else return d # ------------------------------------------------------------------------------------------------------------------ # Methods # ------------------------------------------------------------------------------------------------------------------ def _select(self, bounds, return_indices, outer): if not outer: gt = self.coordinates >= bounds[0] lt = self.coordinates <= bounds[1] I = np.where(gt & lt)[0] elif self.is_monotonic: gt = np.where(self.coordinates >= bounds[0])[0] lt = np.where(self.coordinates <= bounds[1])[0] lo, hi = bounds[0], bounds[1] if self.is_descending: lt, gt = gt, lt lo, hi = hi, lo if self.coordinates[gt[0]] != lo: gt[0] -= 1 if self.coordinates[lt[-1]] != hi: lt[-1] += 1 start = max(0, gt[0]) stop = min(self.size-1, lt[-1]) I = slice(start, stop+1) else: try: gt = self.coordinates >= max(self.coordinates[self.coordinates <= bounds[0]]) except ValueError as e: gt = self.coordinates >= -np.inf try: lt = self.coordinates <= min(self.coordinates[self.coordinates >= bounds[1]]) except ValueError as e: lt = self.coordinates <= np.inf I = np.where(gt & lt)[0] if return_indices: return self[I], I else: return self[I]